PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_10750_iso_1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family MYB_related
Protein Properties Length: 1217aa    MW: 130832 Da    PI: 9.8782
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_10750_iso_1genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding249.2e-08322370345
                                           SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.......TTS-HHHHHHHHH CS
                       Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmg.......kgRtlkqcksrwq 45 
                                           +WTt Ed+ lv +v+ lG++ W++++  ++         R +k+ck+r++
  cra_locus_10750_iso_1_len_4547_ver_3 322 PWTTFEDQALVVLVHDLGPN-WELVSDAINsslqfkcIFRNPKECKERYY 370
                                           8*****************77.************9999889*********8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500907.863315373IPR017877Myb-like domain
SuperFamilySSF466895.63E-7316376IPR009057Homeodomain-like
SMARTSM007172.3E-7319375IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.9E-8319374IPR009057Homeodomain-like
CDDcd001672.17E-5322373No hitNo description
PfamPF139211.8E-6323370No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009909Biological Processregulation of flower development
GO:0043981Biological Processhistone H4-K5 acetylation
GO:0048510Biological Processregulation of timing of transition from vegetative to reproductive phase
GO:0035267Cellular ComponentNuA4 histone acetyltransferase complex
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1217 aa     Download sequence    Send to blast
XGHYRHSVES HVVKYEKTGS SIQEEVGTSA CDVGADFGSQ DNVYEEDEGE TSTYDTSVAF  60
DASKSSRFAQ KRWKNPTKAY SGRTFEVVGD SHYMQCMENK VGSQQLVLGK RPPSSLNVSF  120
PTKRVRTNNR QRITPFTAGT SAYVQVPHKT DASSGDTNSF QDDHSTLHGG SHLPNNLEVD  180
SLAEFEKALP VDSSEMSTKS KKKKKPKHLG SAYDQRWQVD SNFHSEQFQR DHSKKRSEGL  240
QLESNGGSGL LGHVAKKPKL TRPSFDNSFD SAAPVGGSAP SPVASQISNP SRLIRYIGGR  300
DRGGRKNKVL KMPANQSSSG SPWTTFEDQA LVVLVHDLGP NWELVSDAIN SSLQFKCIFR  360
NPKECKERYY LVVDKPIGDG ADSADDSGCS QIYEAMLPGI PKGSARQLFQ KLQGPMEEDT  420
IKSHFEKIMM IEQKLHCRRK QNECHDPKQL QQPHGSHMMA LTQVLPNNLN GGPVLTPLDL  480
CDTTAPSPDL LPLGFQGPHN GGLPISSPGA MAPMLNAPGA NTTVPGSSSM IIGNSLPSSS  540
GPVNGSVRDG RHAVPRSASL SIDEQQRVQQ YNQMLSSRNI SQSNLSSPGA VPGNDRGVRM  600
LPGGNGIGIT GGINRSLPIA RPGFQGIASS SMLNSGSMIS SGMVAIPSPV SMHSGSGSGQ  660
GNSVRPPRDT LPMMRPTQNQ DPQRQMIAPE LQMQVSQGSN QGVPPFGALS SSFPNQTASP  720
PVSSYPLHHQ QSHGMSQQQP HVSSPHHAHL QGTNPQHQAY AIRLAKERHL QHRLLQQQQQ  780
QQQFASSNSL IPHVQPQAKL PVSPPPQNSS QVTTPTVSLS PLSSASPVTA MPPNQQKNQL  840
LPHGLARGAS SGSSGLTNQV GKQRQRQQQQ QQFQPANRHH PQQRQQSQPQ QQSKVLKGVG  900
RGNMMMHQNI STDPSMLNGL SANSGTQSAE KGDQSMHLLQ GQSMYAGSGM NSVQSGKSLV  960
HHSSNQSQPH QKTYSGQAPP LSKHLQQMPN HSDNVNQGHI SAAASAPTLS TGHQPISPMT  1020
MASSSQQQQP QLQPHQKLVN PSQPNVQRVL QNRHVNSEPS TKLQGRESQA EQSPITNSGQ  1080
MGSVATTPQA SGDATSVKQV APSFGCAQSR TSESLYDSVS SNPITNISSV GTPPTNSTSN  1140
EPSPQAGHGL GQRQPSGNLP SVGHDVGMQW QQKPPSPAPQ QQQASSQQVP PPSHSQQQAQ  1200
LVGNGSLFVK PADSRLE
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004247290.10.0PREDICTED: uncharacterized protein LOC101265768 isoform X1
TrEMBLK4CTU10.0K4CTU1_SOLLC; Uncharacterized protein
STRINGSolyc09g060080.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA192622